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Research ArticleFUNCTIONAL

Reduction of Motion Artifacts and Noise Using Independent Component Analysis in Task-Based Functional MRI for Preoperative Planning in Patients with Brain Tumor

E.H. Middlebrooks, C.J. Frost, I.S. Tuna, I.M. Schmalfuss, M. Rahman and A. Old Crow
American Journal of Neuroradiology February 2017, 38 (2) 336-342; DOI: https://doi.org/10.3174/ajnr.A4996
E.H. Middlebrooks
aFrom the Department of Radiology (E.H.M.), University of Alabama at Birmingham, Birmingham, Alabama
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C.J. Frost
bDepartment of Biology (C.J.F.), University of Louisville, Louisville, Kentucky
cMedical Imaging Consultants (C.J.F.), Gainesville, Florida
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I.S. Tuna
dDepartments of Radiology (I.S.T., I.M.S., A.O.C.)
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I.M. Schmalfuss
dDepartments of Radiology (I.S.T., I.M.S., A.O.C.)
fNorth Florida/South Georgia Veterans Administration (I.M.S.), Gainesville, Florida.
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M. Rahman
eNeurosurgery (M.R.), College of Medicine, University of Florida, Gainesville, Florida
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A. Old Crow
dDepartments of Radiology (I.S.T., I.M.S., A.O.C.)
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    Fig 1.

    Distribution of motion parameters in each individual subject showing the number of functional runs characterized as having a none/mild, moderate, or severe rating in each of the 3 recorded parameters (DVARS, task-correlated motion, and MD).

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    Fig 2.

    Distribution of diagnostic and nondiagnostic scans for each correction method per subject.

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    Fig 3.

    Processed fMRI data from 3 different subjects. Each case shows ICA-denoised data in blue, motion-scrubbed data in red, and overlapping areas of ICA-denoised data and motion-scrubbed data in green. The first case (A) is a motor finger task in a patient with a left parietal glioma. The primary motor cortex for the right finger (arrow) is only seen after ICA denoising. Likewise, the supplementary motor area (arrowhead) shows a slight increase in statistical significance. The second subject (B) is undergoing a motor face task with severe task-correlated motion and severe DVARS showing no major change in the primary motor face cortex (arrow); however, the number of motion-related false-positives (noise) is markedly reduced. The third case (C) is a semantic decision task in which no meaningful activation is present on the motion-scrubbed data. Expected areas of activation in the anterior and posterior language areas are clearly present after ICA denoising.

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    Fig 4.

    A and B, Images for a subject undergoing a motor finger task showing areas in which the z score increased (red) after ICA denoising compared with motion scrubbing. The arrow illustrates increased statistical significance in the left finger primary motor cortex adjacent to the tumor. The location of the primary motor cortex for the left finger was confirmed surgically and is shown on the intraoperative map (C), where the crosshairs correspond to primary finger motor cortex. The white “blobs” in C show the thresholded maps for the realignment-only data where there is no activation in the area of the primary motor cortex.

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    Fig 5.

    Signal intensity with time from 1 voxel is shown before (A) and after (B) ICA denoising with the expected hemodynamic response in blue. One can appreciate the amount of overlapping noise from a variety of artifacts resulting in a poor fit with the ideal curve. These noise effects are largely removed after ICA denoising, and the subsequent denoised time course shows a substantially improved fit with the task design.

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American Journal of Neuroradiology: 38 (2)
American Journal of Neuroradiology
Vol. 38, Issue 2
1 Feb 2017
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Cite this article
E.H. Middlebrooks, C.J. Frost, I.S. Tuna, I.M. Schmalfuss, M. Rahman, A. Old Crow
Reduction of Motion Artifacts and Noise Using Independent Component Analysis in Task-Based Functional MRI for Preoperative Planning in Patients with Brain Tumor
American Journal of Neuroradiology Feb 2017, 38 (2) 336-342; DOI: 10.3174/ajnr.A4996

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Reduction of Motion Artifacts and Noise Using Independent Component Analysis in Task-Based Functional MRI for Preoperative Planning in Patients with Brain Tumor
E.H. Middlebrooks, C.J. Frost, I.S. Tuna, I.M. Schmalfuss, M. Rahman, A. Old Crow
American Journal of Neuroradiology Feb 2017, 38 (2) 336-342; DOI: 10.3174/ajnr.A4996
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