Training and Comparison of nnU-Net and DeepMedic Methods for Autosegmentation of Pediatric Brain Tumors

Arastoo Vossough; Nastaran Khalili; Ariana M. Familiar; Deep Gandhi; Karthik Viswanathan; Wenxin Tu; Debanjan Haldar; Sina Bagheri; Hannah Anderson; Shuvanjan Haldar; Phillip B. Storm; Adam Resnick; Jeffrey B. Ware; Ali Nabavizadeh; Anahita Fathi Kazerooni

doi:10.3174/ajnr.A8293

Research ArticlePediatric Neuroimaging

Training and Comparison of nnU-Net and DeepMedic Methods for Autosegmentation of Pediatric Brain Tumors

Arastoo Vossough, Nastaran Khalili, Ariana M. Familiar, Deep Gandhi, Karthik Viswanathan, Wenxin Tu, Debanjan Haldar, Sina Bagheri, Hannah Anderson, Shuvanjan Haldar, Phillip B. Storm, Adam Resnick, Jeffrey B. Ware, Ali Nabavizadeh and Anahita Fathi Kazerooni

American Journal of Neuroradiology August 2024, 45 (8) 1081-1089; DOI: https://doi.org/10.3174/ajnr.A8293

Arastoo Vossough

aFrom the Center for Data Driven Discovery in Biomedicine (A.V., N.K., A.M.F., D.G., K.V., D.H., S.B., H.A., P.B.S., A.R., A.N., A.F.K.), Children’s Hospital of Philadelphia, Philadelphia, Pennsylvania

bDepartment of Radiology (A.V., S.B., J.B.W., A.N.), University of Pennsylvania, Philadelphia, Pennsylvania

cDepartment of Radiology (A.V.), Children’s Hospital of Philadelphia, Philadelphia, Pennsylvania

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Nastaran Khalili

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Ariana M. Familiar

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Deep Gandhi

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Karthik Viswanathan

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Wenxin Tu

dCollege of Arts and Sciences (W.T.), University of Pennsylvania, Philadelphia, Pennsylvania

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Debanjan Haldar

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Sina Bagheri

bDepartment of Radiology (A.V., S.B., J.B.W., A.N.), University of Pennsylvania, Philadelphia, Pennsylvania

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Hannah Anderson

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Shuvanjan Haldar

eSchool of Engineering (S.H.), Rutgers University, New Brunswick, New Jersey

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Phillip B. Storm

fDepartment of Neurosurgery (P.B.S., A.F.K.), Children’s Hospital of Philadelphia, Philadelphia, Pennsylvania

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Adam Resnick

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Jeffrey B. Ware

bDepartment of Radiology (A.V., S.B., J.B.W., A.N.), University of Pennsylvania, Philadelphia, Pennsylvania

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Ali Nabavizadeh

bDepartment of Radiology (A.V., S.B., J.B.W., A.N.), University of Pennsylvania, Philadelphia, Pennsylvania

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Anahita Fathi Kazerooni

fDepartment of Neurosurgery (P.B.S., A.F.K.), Children’s Hospital of Philadelphia, Philadelphia, Pennsylvania

gCenter for AI & Data Science for Integrated Diagnostics (A.F.K.), University of Pennsylvania, Philadelphia, Pennsylvania

hCenter for Biomedical Image Computing and Analytics (A.F.K.), University of Pennsylvania, Philadelphia, Pennsylvania

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Training and Comparison of nnU-Net and DeepMedic Methods for Autosegmentation of Pediatric Brain Tumors

American Journal of Neuroradiology Aug 2024, 45 (8) 1081-1089; DOI: 10.3174/ajnr.A8293

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nnU-Net vs DeepMedic for PEDS BT Segmentation

American Journal of Neuroradiology Aug 2024, 45 (8) 1081-1089; DOI: 10.3174/ajnr.A8293

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