Skip to main content
Advertisement

Main menu

  • Home
  • Content
    • Current Issue
    • Accepted Manuscripts
    • Article Preview
    • Past Issue Archive
    • AJNR Case Collection
    • Case of the Week Archive
    • Classic Case Archive
    • Case of the Month Archive
  • Special Collections
    • Spinal CSF Leak Articles (Jan 2020-June 2024)
    • 2024 AJNR Journal Awards
    • Most Impactful AJNR Articles
  • Multimedia
    • AJNR Podcast
    • AJNR Scantastics
    • Video Articles
  • For Authors
    • Submit a Manuscript
    • Author Policies
    • Fast publishing of Accepted Manuscripts
    • Graphical Abstract Preparation
    • Manuscript Submission Guidelines
    • Imaging Protocol Submission
    • Submit a Case for the Case Collection
  • About Us
    • About AJNR
    • Editorial Board
  • More
    • Become a Reviewer/Academy of Reviewers
    • Subscribers
    • Permissions
    • Alerts
    • Feedback
    • Advertisers
    • ASNR Home
  • Other Publications
    • ajnr

User menu

  • Alerts
  • Log in

Search

  • Advanced search
American Journal of Neuroradiology
American Journal of Neuroradiology

American Journal of Neuroradiology

ASHNR American Society of Functional Neuroradiology ASHNR American Society of Pediatric Neuroradiology ASSR
  • Alerts
  • Log in

Advanced Search

  • Home
  • Content
    • Current Issue
    • Accepted Manuscripts
    • Article Preview
    • Past Issue Archive
    • AJNR Case Collection
    • Case of the Week Archive
    • Classic Case Archive
    • Case of the Month Archive
  • Special Collections
    • Spinal CSF Leak Articles (Jan 2020-June 2024)
    • 2024 AJNR Journal Awards
    • Most Impactful AJNR Articles
  • Multimedia
    • AJNR Podcast
    • AJNR Scantastics
    • Video Articles
  • For Authors
    • Submit a Manuscript
    • Author Policies
    • Fast publishing of Accepted Manuscripts
    • Graphical Abstract Preparation
    • Manuscript Submission Guidelines
    • Imaging Protocol Submission
    • Submit a Case for the Case Collection
  • About Us
    • About AJNR
    • Editorial Board
  • More
    • Become a Reviewer/Academy of Reviewers
    • Subscribers
    • Permissions
    • Alerts
    • Feedback
    • Advertisers
    • ASNR Home
  • Follow AJNR on Twitter
  • Visit AJNR on Facebook
  • Follow AJNR on Instagram
  • Join AJNR on LinkedIn
  • RSS Feeds

Welcome to the new AJNR, Updated Hall of Fame, and more. Read the full announcements.


AJNR is seeking candidates for the position of Associate Section Editor, AJNR Case Collection. Read the full announcement.

 

Research ArticleFunctional

Peeking into the Black Box of Coregistration in Clinical fMRI: Which Registration Methods Are Used and How Well Do They Perform?

F.D. Raslau, L.Y. Lin, A.H. Andersen, D.K. Powell, C.D. Smith and E.J. Escott
American Journal of Neuroradiology December 2018, 39 (12) 2332-2339; DOI: https://doi.org/10.3174/ajnr.A5846
F.D. Raslau
aFrom the Departments of Radiology (F.D.R., L.Y.L., E.J.E., C.D.S.)
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for F.D. Raslau
L.Y. Lin
aFrom the Departments of Radiology (F.D.R., L.Y.L., E.J.E., C.D.S.)
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for L.Y. Lin
A.H. Andersen
cNeuroscience (A.H.A., D.K.P., C.D.S.)
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for A.H. Andersen
D.K. Powell
cNeuroscience (A.H.A., D.K.P., C.D.S.)
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for D.K. Powell
C.D. Smith
aFrom the Departments of Radiology (F.D.R., L.Y.L., E.J.E., C.D.S.)
bNeurology (C.D.S.)
cNeuroscience (A.H.A., D.K.P., C.D.S.)
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for C.D. Smith
E.J. Escott
aFrom the Departments of Radiology (F.D.R., L.Y.L., E.J.E., C.D.S.)
dOtolaryngology-Head & Neck Surgery (E.J.E.), University of Kentucky, Lexington, Kentucky.
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for E.J. Escott
  • Article
  • Figures & Data
  • Info & Metrics
  • Responses
  • References
  • PDF
Loading

Article Figures & Data

Figures

  • Fig 1.
    • Download figure
    • Open in new tab
    • Download powerpoint
    Fig 1.

    Sample patient with a right temporal lobe tumor. The upper row illustrates the challenge in functional-to-anatomic multimodal alignment between T2* EPI (A) and T1-weighted MPRAGE images (B). Note the inherently poor resolution of EPI. These images also show signal drop-out from susceptibility artifacts near the sinuses and craniotomy (asterisks). The lower row highlights the great difficulty in judging accurate alignment simply by visual inspection. The fusion image of the average EPI mask over the MPRAGE image (C) shows signal drop-out at the skull base (asterisks), which can potentially confound registration algorithms. The fusion image of edge-enhanced EPI (D) delineates structural boundaries in EPI data and reveals slight misalignment (arrows) due to patient motion between MPRAGE and EPI, primarily in the inferior-superior direction along with some rotation.

  • Fig 2.
    • Download figure
    • Open in new tab
    • Download powerpoint
    Fig 2.

    Graph plotting the average transformation parameters for translation and rotation as calculated by several metrics: Hellinger, mutual information, normalized mutual information, correlation ratio, and local Pearson correlation. The transformation effects of LPC are in the opposite direction (asterisks) for most translations and rotations, most notably the inferior translation and rotation in pitch. R-L indicates right-left; A-P, anterior-posterior; and S-I, superior-inferior.

  • Fig 3.
    • Download figure
    • Open in new tab
    • Download powerpoint
    Fig 3.

    Histogram summarizing the objective assessment of coregistration using edge-enhanced images for both HEL and LPC compared with the initial nonregistered condition. In the case of the HEL metric, the accuracy of function-to-structural alignment actually worsens in 59% of cases and improves in 11% of cases. However, in the case of the LPC metric, none of the cases worsened and 41% improved.

  • Fig 4.
    • Download figure
    • Open in new tab
    • Download powerpoint
    Fig 4.

    The upper row displays activation areas from the antonym task superimposed on coronal MPRAGE images (A–C). The high-contrast window-level setting helps demarcate the tumor in the left parietal lobe (asterisks). Lesion-to-activation distance between the tumor and the nearest activation area (large yellow arrows) is quite different: 2.6 mm in NR (A), 12.9 mm in HEL (B), and 7.4 mm in LPC (C). Notice that the activation area in the ventral temporo-occipital junction (green arrowheads) is displaced in the cerebellum in HEL (B). The lower row consists of edge-enhanced EPI superimposed on MPRAGE images (D–F). Visual inspection reveals that edge-enhanced EPI (small blue arrows) is too high in the initial NR (D), too low in HEL (E), but just right in LPC (F).

  • Fig 5.
    • Download figure
    • Open in new tab
    • Download powerpoint
    Fig 5.

    Histogram displaying the maximum differences in LAD among LPC, HEL, and NR. Data are also sorted by imaging plane. Notice that the LAD difference is <3 mm in most cases, and this is especially true in the axial plane. However, a nontrivial number of cases have a >3 mm discrepancy, particularly in the coronal and sagittal planes.

  • Fig 6.
    • Download figure
    • Open in new tab
    • Download powerpoint
    Fig 6.

    Histogram of the maximum differences in LAD between LPC and NR. Data are also sorted by imaging plane. Because edge-enhanced analysis has shown LPC to produce accurate alignment, the contrast between LPC and NR reveals the degree of misalignment when registration is not performed. The most pronounced LAD differences are found in the coronal and sagittal planes.

  • Fig 7.
    • Download figure
    • Open in new tab
    • Download powerpoint
    Fig 7.

    Histogram of the maximum differences in LAD between LPC and HEL. Data are also sorted by imaging plane. Because it has been shown that LPC produces accurate alignment and that HEL systematically introduces misregistration error, the contrast between LPC and HEL serves to illustrate the degree of misalignment that may result if a poor registration metric is chosen. The most pronounced LAD differences are found in the coronal and sagittal planes.

PreviousNext
Back to top

In this issue

American Journal of Neuroradiology: 39 (12)
American Journal of Neuroradiology
Vol. 39, Issue 12
1 Dec 2018
  • Table of Contents
  • Index by author
  • Complete Issue (PDF)
Advertisement
Print
Download PDF
Email Article

Thank you for your interest in spreading the word on American Journal of Neuroradiology.

NOTE: We only request your email address so that the person you are recommending the page to knows that you wanted them to see it, and that it is not junk mail. We do not capture any email address.

Enter multiple addresses on separate lines or separate them with commas.
Peeking into the Black Box of Coregistration in Clinical fMRI: Which Registration Methods Are Used and How Well Do They Perform?
(Your Name) has sent you a message from American Journal of Neuroradiology
(Your Name) thought you would like to see the American Journal of Neuroradiology web site.
CAPTCHA
This question is for testing whether or not you are a human visitor and to prevent automated spam submissions.
Cite this article
F.D. Raslau, L.Y. Lin, A.H. Andersen, D.K. Powell, C.D. Smith, E.J. Escott
Peeking into the Black Box of Coregistration in Clinical fMRI: Which Registration Methods Are Used and How Well Do They Perform?
American Journal of Neuroradiology Dec 2018, 39 (12) 2332-2339; DOI: 10.3174/ajnr.A5846

Citation Manager Formats

  • BibTeX
  • Bookends
  • EasyBib
  • EndNote (tagged)
  • EndNote 8 (xml)
  • Medlars
  • Mendeley
  • Papers
  • RefWorks Tagged
  • Ref Manager
  • RIS
  • Zotero
0 Responses
Respond to this article
Share
Bookmark this article
Peeking into the Black Box of Coregistration in Clinical fMRI: Which Registration Methods Are Used and How Well Do They Perform?
F.D. Raslau, L.Y. Lin, A.H. Andersen, D.K. Powell, C.D. Smith, E.J. Escott
American Journal of Neuroradiology Dec 2018, 39 (12) 2332-2339; DOI: 10.3174/ajnr.A5846
del.icio.us logo Twitter logo Facebook logo Mendeley logo
  • Tweet Widget
  • Facebook Like
  • Google Plus One
Purchase

Jump to section

  • Article
    • Abstract
    • ABBREVIATIONS:
    • Materials and Methods
    • Results
    • Discussion
    • Conclusions
    • Acknowledgments
    • Footnotes
    • References
  • Figures & Data
  • Info & Metrics
  • Responses
  • References
  • PDF

Related Articles

  • No related articles found.
  • PubMed
  • Google Scholar

Cited By...

  • Improving 3D Edge Detection for Visual Inspection of MRI Coregistration and Alignment
  • Crossref
  • Google Scholar

This article has not yet been cited by articles in journals that are participating in Crossref Cited-by Linking.

More in this TOC Section

  • Glutaric Aciduria Type 1: DK vs. Conventional MRI
  • Kurtosis and Epileptogenic Tubers: A Pilot Study
  • Perifocal Edema in Meningiomas&Brain Connectivity
Show more Functional

Similar Articles

Advertisement

Indexed Content

  • Current Issue
  • Accepted Manuscripts
  • Article Preview
  • Past Issues
  • Editorials
  • Editors Choice
  • Fellow Journal Club
  • Letters to the Editor

Cases

  • Case Collection
  • Archive - Case of the Week
  • Archive - Case of the Month
  • Archive - Classic Case

Special Collections

  • Special Collections

Resources

  • News and Updates
  • Turn around Times
  • Submit a Manuscript
  • Author Policies
  • Manuscript Submission Guidelines
  • Evidence-Based Medicine Level Guide
  • Publishing Checklists
  • Graphical Abstract Preparation
  • Imaging Protocol Submission
  • Submit a Case
  • Become a Reviewer/Academy of Reviewers
  • Get Peer Review Credit from Publons

Multimedia

  • AJNR Podcast
  • AJNR SCANtastic
  • Video Articles

About Us

  • About AJNR
  • Editorial Board
  • Not an AJNR Subscriber? Join Now
  • Alerts
  • Feedback
  • Advertise with us
  • Librarian Resources
  • Permissions
  • Terms and Conditions

American Society of Neuroradiology

  • Not an ASNR Member? Join Now

© 2025 by the American Society of Neuroradiology All rights, including for text and data mining, AI training, and similar technologies, are reserved.
Print ISSN: 0195-6108 Online ISSN: 1936-959X

Powered by HighWire